Skip to main content

Table 1 Summary of common SNPs within +/− 20 bp of CpG probes by population

From: Characterization of the Illumina EPIC array for optimal applications in epigenetic research targeting diverse human populations

Population

Description

Number of individuals

MAF > 0.05

Super population

MAF > 0.05

CHB

Han Chinese in Beijing, China

103

64,521

EAS (East Asian)

64,810

JPT

Japanese in Tokyo, Japan

104

64,785

CHS

Southern Han Chinese

105

64,509

CDX

Chinese Dai in Xishuangbanna, China

93

64,267

KHV

Kinh in Ho Chi Minh City, Vietnam

99

65,534

CEU

Utah Residents (CEPH) with Northern and Western European Ancestry

99

68,818

EUR (European)

68,155

TSI

Toscani in Italia

107

68,808

FIN

Finnish in Finland

99

69,113

GBR

British in England and Scotland

91

67,296

IBS

Iberian Population in Spain

107

68,676

YRI

Yoruba in Ibadan, Nigeria

108

100,424

AFR (African)

96,674

LWK

Luhya in Webuye, Kenya

99

100,029

GWD

Gambian in Western Divisions in the Gambia

113

97,879

MSL

Mende in Sierra Leone

85

101,091

ESN

Esan in Nigeria

99

101,502

ASW

Americans of African Ancestry in SW USA

61

91,790

ACB

African Caribbeans in Barbados

96

97,684

MXL

Mexican Ancestry from Los Angeles, USA

64

68,247

AMR (Admixed American)

70,576

PUR

Puerto Ricans from Puerto Rico

104

72,095

CLM

Colombians from Medellin, Colombia

94

70,452

PEL

Peruvians from Lima, Peru

85

63,122

GIH

Gujarati Indian from Houston, Texas

103

69,747

SAS (South Asian)

70,068

PJL

Punjabi from Lahore, Pakistan

96

70,290

BEB

Bengali from Bangladesh

86

69,960

STU

Sri Lankan Tamil from the UK

102

69,496

ITU

Indian Telugu from the UK

102

69,499